PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00233.1.g00120.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 304aa    MW: 33526.8 Da    PI: 10.7754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00233.1.g00120.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-133283155
                                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                  ++++h ++Er+RR+++N+ +  Lr+l P +   + k+ + a+i   A+++I++Lq
  Zjn_sc00233.1.g00120.1.am.mk 32 KKMSHIAVERNRRRQMNEHLKVLRSLTPAL---YIKRGDQASIIGGAIDFIRELQ 83
                                  689***************************...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.32E-132987No hitNo description
Gene3DG3DSA:4.10.280.102.9E-142985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-1730103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.6053182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-103283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-123788IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSGLRSSKCG ARGARRGSSS GRCLHTGRRR RKKMSHIAVE RNRRRQMNEH LKVLRSLTPA  60
LYIKRGDQAS IIGGAIDFIR ELQQVLESLE ARKKRRRSSS SFSTSPTPSP RSLLTTASSS  120
SPTKHHQVEL AACCNSPVAD VEAKISGSNV LLRTLSRRIP GHAVRMIAVL ENLHLDVLHL  180
NISTMDDTIG LECQLSVDDL VYEVQQTFAC CHQAELLEHQ DSSVSSVRCK WICPPCVHIW  240
SHRFVSSTIA SPLLPAPPPP PPPPLSFPAP PLLHLLLPAI SSPPPHLLSF LCGRRFPSHS  300
FGRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269691e-45KJ726969.1 Zea mays clone pUT3670 bHLH transcription factor (bHLH82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968634.12e-84PREDICTED: transcription factor MUTE
SwissprotQ9M8K62e-65MUTE_ARATH; Transcription factor MUTE
TrEMBLK3XR972e-82K3XR97_SETIT; Uncharacterized protein
STRINGSi004438m6e-82(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.12e-54bHLH family protein